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基于网络药理学和分子对接技术探讨紫苏醛对脑缺血损伤相关基因的作用

Exploring the effect of perillaldehyde on cerebral ischemia related genes:A study based on network pharmacology and molecular docking

  • 摘要: 目的 本研究拟通过网络药理学和分子对接技术探讨紫苏醛(perillaldehyde,PAH)对脑缺血损伤(cerebral ischemic injury,CII)相关基因的影响。方法 通过网络药理学PubChem、TCMSP、PharmMapper和UniProt平台查询PAH的理化性质和作用靶点。使用Gene cards、DisGenet和OMIM疾病数据库检索CII的相关靶点,利用韦恩图绘制PAH和CII的交集靶点。使用STRING平台构建PPI网络,采用Cytoscape软件及富集分析筛选PAH作用于CII的关键靶点及相关通路。通过分子对接预判PAH与CII相互作用的关键分子。结果 通过网络药理学分析,PharmMapper、Swisstargetprediction和TargetNet平台搜索到790个不重复的PAH的作用靶点,通过Gene cards、DisGenet和OMIM平台搜索到CII的不重复作用靶点4250个,绘制韦恩图筛选出PAH与CII产交集靶点373个。经PPI蛋白互作及Cytoscape分析,获得关键靶点186个。富集分析结果显示,PAH与CII主要涉及代谢、突触后膜电位、细胞间粘附、细胞凋亡、T细胞的选择、细胞骨架、钙离子运输和端脑细胞迁移等过程。经分子对接发现,PAH能够与CII成功对接的核心靶点Akt1、Bcl 2和Gsk3b。结论 PAH可通过调控核心靶点Akt1、Bcl 2和Gsk3b,影响代谢、细胞凋亡和细胞迁移等过程改善CII。

     

    Abstract: Objective This study aims to explore the effects of Perillaldehyde (PAH) on genes associated with Cerebral ischemic injury(CII) using network pharmacology and molecular docking. Methods The physicochemical properties and targets of PAH were identified through network pharmacology platforms such as PubChem, TCMSP, PharmMapper and UniProt. Disease targets associated with CII were retrieved from Gene cards, DisGenet and OMIM disease databases. The intersection targets of PAH and CII were visualized using a Venn diagram. A Protein-Protein Interaction (PPI) network was constructed using the STRING platform, and key targets along with their related pathways were screened using Cytoscape software and enrichment analysis. Finally, Molecular docking was used to predicted the key molecules of the interaction between PAH and CII. Results Network pharmacology analysis identified a total of 790 non-redundant potential targets of PAH from the PharmMapper, Swisstargetprediction, and Target-Net platforms. Concurrently, a total of 4250 unique targets of CII were retrieved from the Gene cards,DisGenet and OMIM platforms. A Venn diagram identified 373 intersection targets PAH and CII. PPI and Cytoscape analysis yielded 186 key targets. Enrichment analysis revealed that PAH and CII were mainly associated with processes including metabolism, postsynaptic membrane potential, intercellular adhesion,apoptosis, T-cell selection, cytoskeleton organization, calcium ion transport, and telencephalic cell migration. Molecular docking revealed that core targets for the successful docking between PAH and CII include Akt1, Bcl 2 and Gsk3b of CII. Conclusions PAH ameliorates CII by regulating core targets Akt1, Bcl 2 and Gsk3b, thereby influencing processes such as metabolism, apoptosis and cell migration.

     

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